Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs73097184 chr12:52835842 C/A 0.000153 491 29.32 35.67 22.93 KM Plot
PRAD rs73097189 chr12:52837769 G/A 0.000131 492 29.2 36.05 22.93 KM Plot
PRAD rs73097191 chr12:52837780 C/A 0.000131 492 29.2 36.05 22.93 KM Plot
PRAD rs73097196 chr12:52838156 C/T 0.000135 493 29.23 36.05 22.93 KM Plot
PRAD rs73099326 chr12:52856095 G/T 8.61E-7 486 29.97 35.77 22.93 KM Plot
PRAD rs73103246 chr12:52894113 C/A 0.000191 485 29.8 35.33 22.93 KM Plot
PRAD rs73149865 chr12:129326378 A/T 4.04E-5 489 31.07 31.05 24 KM Plot
PRAD rs73161279 chr2:10481001 T/G 1.05E-11 491 30.27 33.25 10.03 KM Plot
PRAD rs7322488 chr13:96916634 A/G 0.000111 494 30.97 30.77 29.17 KM Plot
PRAD rs73236772 chr6:170481781 A/G 2.85E-5 475 30.77 31.2 23.5 KM Plot
PRAD rs732691 chr6:43240390 C/T 1.14E-7 488 31.37 28.07 21.57 KM Plot
PRAD rs73294088 chr17:37805684 G/A 5.4E-6 493 30.8 33.05 28.63 KM Plot
PRAD rs73294092 chr17:37808239 G/A 5.4E-6 493 30.8 33.05 28.63 KM Plot
PRAD rs73296106 chr17:37815623 G/A 5.4E-6 493 30.8 33.05 28.63 KM Plot
PRAD rs73330342 chr5:178983987 A/G 3.33E-11 482 30.8 36.33 15.87 KM Plot